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Shopify & QuickBooks Integration for Accurate and Reliable Accounting

In just a few clicks, your orders, Shopify payments, refunds and fees can automatically be exported into invoices and synced to QuickBooks. Save yourself hours – possibly days – of manual reconciliation.

7-day free trial. Additional charges may apply.

Full Support for
QuickBooks Online
Trusted by thousands of shopify BRANDS across THE WORLD

Automate your Shopify accounting in just a few clicks

Automatically export Shopify payouts & orders, separated by fees, shipping, gift card income and much more. Pushed into QuickBooks in real-time to make reconciling a breeze.

Sync Shopify with QuickBooks now


Start a 14-day risk-free trial by downloading our Shopify app from the App Store or log in directly with your myshopify.com domain.


Connect the QuickBooks account related to your Shopify store. New invoices will be sent to this account from new orders and payouts.


Adjust settings, select a starting date and Reconcile.ly will begin sending invoices for orders and payouts in real-time, every day.

What Our Customers Say

Fantastic and very simple little app. The 14 day free trial is a great way to try before you buy. We were very pleased and everything worked perfectly, very quick support provided via live chat too. Will save us hours of processing.


Simply fantastic - and the support is awesome (shout out to Eric and Eyal!) If you are running Shopify and Xero - look absolutely no further!!


After many failed attempts with other apps, this one is the best when it came to setting up and connecting to my Xero account. Works seamlessly with the Shopify store and Xero. save time, stress and money with this app when it comes to reconciling lot's of small transaction :) Highly recommend

Mist NZ

About Reconcile.ly & Xero

Reconcile.ly Shopify App logo

Reconcile.ly will automatically export any Shopify payouts into invoices and ensure they are synced and allocate correctly within your QuickBooks accounts. Even payments that didn’t use the ‘Shopify Payments’ facility can be imported too. We can also retrieve historical payments which are up to 60 days old.

What does Reconcile.ly do?
Once connected, Reconcile.ly supports multi-currency exchange rates and can organise your payments into:

  • Tax-inclusive and tax-exclusive sales
  • Shipping fees
  • Refunds
  • Gain / losses from currency exchange rates

Accountants Partnership program
Simple set-and-forget settlement accounting for your client’s. We can tailor the best rates for you. Learn more Click here to learn more.

Xero logo

Introducing QuickBooks, the ultimate solution for small businesses.

  • Accessible on any device, QuickBooks offers real-time cash flow insights, empowering you to manage your business on the go.
  • Run your business on the go. Use your mobile app to reconcile, send invoices, or create expense claims - from anywhere.
  • Get paid faster with online invoicing. Send online invoices to your customers - and get updated when they're opened.
  • Reconcile in seconds. QuickBooks imports and categorises your latest bank transactions. Just click ok to reconcile.
Try QuickBooks for Free

How to connect Reconcile.ly


Connect your Shopify & QuickBooks accounts to Reconcile.ly

Simply click log in at the top of this page, log in using Shopify then you can easily connect your QuickBooks. For more see our getting started guide.


Configure your Reconcile.ly account

Set up your invoice settings and account mappings. This allows you to correctly adjust the right accounts in QuickBooks for each income and expense type.


Done! Automated reconciliation

Never worry about manually adjusting your order data in QuickBooks again. Your summarised invoices will be sent directly to QuickBooks.

Integration Details

  • Reconcile.ly gets organisation information, contact and account details from QuickBooks so we can configure your invoices.
  • Reconcile.ly sends invoices and credit notes to QuickBooks - to allow you to reconcile your Shopify payouts.
  • We also add contacts and accounts to your QuickBooks if you create these via Reconcile.ly.
  • Reconcile.ly syncs its data each time you log in, in real time when adjusting settings and regularly sends invoices to QuickBooks during our background processing.

Benefits of
Reconcile.ly + QuickBooks

Ecommerce accounting can quickly get complicated – our goal is to provide you a simple, reliable and affordable solution that eliminates the headache of reconciliation

Shopify app for settlement accounting

Settlement Accounting

Once connected all Shopify Payments payouts will be easy to reconcile and all your accounts with be adjusted with the correct data.

  • Invoices match bank deposits
  • Configure how invoices are generated
  • Reconcile payouts with a single click
Try Reconcilely for free

Data Integrity

We create an invoice for every payout you receive, look at every order contained in it and ensure only the correct sales data is being sent to QuickBooks.

  • Refunds apply accurate credit notes
  • Handle partial payments automatically
  • Exclude orders from any gateway
Try Reconcilely for free
Send Shopify orders to Xero
Shopify accounting automation


No more manual adjustments or data entry. Your summarised invoices will be sent directly to QuickBooks for each payout, as will every external order.

  • Group invoice lines by product types
  • Group invoice lines by country (VAT)
  • Apply custom mapping codes
Try Reconcilely for free

Reliable Shopify accounting without breaking the bank

Risk-free 7-day free trial on all plans




Ideal for businesses looking to get started in sales and freelance consulting.

  • 400 Orders Per Month
  • Summarised Payout Invoices
  • Live Chat Support
  • Giftcard Support
  • No Multi-Currency Support



Ideal for businesses looking to get started in sales and freelance consulting.

  • 800 Orders Per Month
  • Summarised Payout Invoices
  • Live Chat Support
  • Giftcard Support
  • Multi-Currency Support



Ideal for businesses looking to get started in sales and freelance consulting.

  • Unlimited Orders Per Month
  • Summarised Payout Invoices
  • Live Chat Support
  • Giftcard Support
  • Multi-Currency Support

We also offer a Starter Plan for $9/m, which comes with 100 Orders Per Month, Summarised Payout Invoices and Email Support.